This plot shows 10,000 random iterations of the Maximum Likelihood chains
Root state probabilities for each run
Mean transition rates
Density distributions of rate transition estimates. Line show mean rates.
[1] "No Reverse Jump used"
[1] "No Reverse Jump used"
[1] "No Reverse Jump used"
[1] "No Reverse Jump used"
[1] "No Reverse Jump used"
[1] "No stepping stones sampler set"
[1] "No stepping stones sampler set"
[1] "No stepping stones sampler set"
[1] "No stepping stones sampler set"
[1] "No stepping stones sampler set"
[1] "No stepping stones sampler set"