Data input

Column

BayesTraits Header

Column

Restrictions

Reconstructions / Fossilisations

Priors

Tree

MCMC traces

Column

ML Chain

This plot shows 10,000 random iterations of the Maximum Likelihood chains

Column

ML Chain Density

ML Chain violins

MCMC Diagnostics

Column

Effective Sampling Sizes

Column

Autocorrelation

Rate Estimates

Row

Root State

Root state probabilities for each run

Root state probabilities for each run

Transition Rates Network

Mean transition rates

Mean transition rates

Row

Transition Rates Densities

Density distributions of rate transition estimates. Line show mean rates.

Density distributions of rate transition estimates. Line show mean rates.

Node Reconstructions

Column

Node Reconstruction / Fossilisation

Column

Phylogeny

Acceptance Rates

Mean Acceptance Parameters

Acceptance Parameters Traces

RevJ Model Reduction

Row

Reverse Jump Model Sampling

[1] "No Reverse Jump used"

Reverse Jump Model Ranking - Table

[1] "No Reverse Jump used"

Reverse Jump Model Ranking - Barchart

[1] "No Reverse Jump used"

Row

% Non-zero transitions

[1] "No Reverse Jump used"

Three most frequently sampled model

[1] "No Reverse Jump used"

Model Comparison - LogBF

Column

Stepping Stone Sampler

[1] "No stepping stones sampler set"

Log Marginal Likelihood

[1] "No stepping stones sampler set"

Log Bayes Factor

[1] "No stepping stones sampler set"

Column

Stone Power

[1] "No stepping stones sampler set"

Stone Marginal Likelihood

[1] "No stepping stones sampler set"

Running Marginal Likelihood

[1] "No stepping stones sampler set"